two easy ways to find out where a skip is coming from:
1: get ahold of a handheld temp gun, pop the hood and within the first minute or two of the engine running, take a reading at each individual exhaust port on the exhaust manifolds. get the heat gun as close as you reasonably can to ensure accurate readings. your looking for all cylinders to be within 70-80 degrees temp wise, abnormally cold means weak spark/lean fuel on that cylinder, abnormally hot means way too much fuel/ late spark.
you have to be kinda quick for this method to work as the exhaust manifolds heat soak quickly and makes accurate readings harder to obtain.
2: (be careful use insulated tools) have someone pull one plug wire at a time and listen for changes in the idle speed, whichever coil(s) make little or no difference in running quality is were your problem lies.
once you have it isolated to 1 or 2 troubled cylinders, measure the resistance on the injector and the primary and secondary side of the individual coil for each cylinder that is weak, do it cold and then again after the motor is at operating temp, also ohm check the plug wires themselves, if all ohm check good; and you have good plugs then check compression on the cylinders.
if you find a cylinder with low compression, put a tablespoon of motor oil in the cylinder and spin the motor 2-3 revolutions and re-test compression, if number improves dramatically then you have a broken/collapsed piston ring, if the number stays low then the head gasket or valve seat is leaking.
if you have a cylinder w/ less than 90 psi it will never run right, lower than 90psi and the cylinder cannot achieve complete combustion.
and FYI i have personally seen a dead/ shorted coil or injector cause a miss, and the computer never catches it, never set a code or anything.
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